This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 6 Casal2 model configurations (3 BetaDiff and 3 ADOL-C).
The CASAL model sensitivity 1 has a smaller minimisation tolerance value than the CASAL base model (1e-6 vs. 2e-3).
The Casal2 ADOL-C and BetaDiff low tolerance models have a smaller tolerance value than the CASAL base model (1e-6 vs. 2e-3).
The main characteristics of the Test Case LIN (ling) CASAL model are:
Observation data include:
Parameters estimated include:
## [1] "Mon May 23 15:06:00 2022"
## R version 3.6.0 (2019-04-26)
## Platform: x86_64-redhat-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
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## Matrix products: default
## BLAS/LAPACK: /usr/lib64/R/lib/libRblas.so
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## locale:
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## [5] LC_MONETARY=en_GB.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_GB.UTF_8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_GB.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] Casal2_22.05 casal_2.30 devtools_2.4.3 usethis_2.1.5 rlist_0.4.6.2
## [6] ggthemes_4.2.4 gridExtra_2.3 coda_0.19-4 ggmcmc_1.5.1.1 ggplot2_3.3.6
## [11] tidyr_1.2.0 huxtable_5.4.0 dplyr_1.0.9 plyr_1.8.7
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## loaded via a namespace (and not attached):
## [1] Rcpp_1.0.8.3 lattice_0.20-38 prettyunits_1.1.1 ps_1.7.0
## [5] assertthat_0.2.1 rprojroot_2.0.3 digest_0.6.29 utf8_1.2.2
## [9] R6_2.5.1 evaluate_0.15 pillar_1.7.0 rlang_1.0.2
## [13] data.table_1.14.2 callr_3.7.0 jquerylib_0.1.4 rmarkdown_2.14
## [17] desc_1.4.1 stringr_1.4.0 munsell_0.5.0 compiler_3.6.0
## [21] xfun_0.31 pkgconfig_2.0.3 pkgbuild_1.3.1 htmltools_0.5.2
## [25] tidyselect_1.1.2 tibble_3.1.7 reshape_0.8.9 fansi_1.0.3
## [29] crayon_1.5.1 withr_2.5.0 brio_1.1.3 grid_3.6.0
## [33] jsonlite_1.8.0 GGally_2.1.2 gtable_0.3.0 lifecycle_1.0.1
## [37] magrittr_2.0.3 scales_1.2.0 cli_3.3.0 stringi_1.7.6
## [41] cachem_1.0.6 fs_1.5.2 remotes_2.4.2 testthat_3.1.4
## [45] bslib_0.3.1 ellipsis_0.3.2 generics_0.1.2 vctrs_0.4.1
## [49] RColorBrewer_1.1-3 tools_3.6.0 glue_1.6.2 purrr_0.3.4
## [53] processx_3.5.3 pkgload_1.2.4 fastmap_1.1.0 yaml_2.3.5
## [57] colorspace_2.0-3 sessioninfo_1.2.2 memoise_2.0.1 knitr_1.39
## [61] sass_0.4.1
source('../../R-functions/report_read_in_CASAL_MPD_files.R')
source('../../R-functions/report_read_in_Casal2_MPD_files.R')
Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results
| rownames | Base_Model | Sensitivity_1 | Percent_Diff |
|---|---|---|---|
| q[tan_sum].q | 0.09128 | 0.09105 | 0.252 |
| q[tan_aut].q | 0.12620 | 0.12590 | 0.238 |
| initialization.B0 | 309000.00000 | 310700.00000 | -0.550 |
| natural_mortality.ogive_all1 | 12.49000 | 12.98000 | -3.923 |
| natural_mortality.ogive_all2 | 0.13270 | 0.12780 | 3.693 |
| natural_mortality.ogive_all3 | 0.38190 | 0.44990 | -17.806 |
| natural_mortality.ogive_all4 | 0.35060 | 0.35390 | -0.941 |
| selectivity[surveysum_sel].male1 | 4.73800 | 4.88100 | -3.018 |
| selectivity[surveysum_sel].male2 | 1.75000 | 1.77200 | -1.257 |
| selectivity[surveysum_sel].male3 | 0.61000 | 0.60160 | 1.377 |
| selectivity[surveysum_sel].female1 | 5.46000 | 5.61300 | -2.802 |
| selectivity[surveysum_sel].female2 | 2.20600 | 2.21500 | -0.408 |
| selectivity[surveyaut_sel].male1 | 5.50400 | 5.64400 | -2.544 |
| selectivity[surveyaut_sel].male2 | 2.31400 | 2.29800 | 0.691 |
| selectivity[surveyaut_sel].male3 | 0.93920 | 0.93310 | 0.649 |
| selectivity[surveyaut_sel].female1 | 5.92000 | 6.06200 | -2.399 |
| selectivity[surveyaut_sel].female2 | 2.77800 | 2.73800 | 1.440 |
| selectivity[trawl_sel].male1 | 8.37000 | 8.40400 | -0.406 |
| selectivity[trawl_sel].male2 | 1.97200 | 1.94700 | 1.268 |
| selectivity[trawl_sel].male3 | 61.65000 | 200.00000 | -224.412 |
| selectivity[trawl_sel].male4 | 1.04100 | 1.02100 | 1.921 |
| selectivity[trawl_sel].female1 | 8.66400 | 8.74100 | -0.889 |
| selectivity[trawl_sel].female2 | 2.10000 | 2.08800 | 0.571 |
| selectivity[trawl_sel].female3 | 43.31000 | 40.38000 | 6.765 |
| selectivity[line_home_sel].male1 | 11.45000 | 8.58300 | 25.039 |
| selectivity[line_home_sel].male2 | 8.59000 | 4.54700 | 47.066 |
| selectivity[line_home_sel].male3 | 0.38010 | 0.26910 | 29.203 |
| selectivity[line_home_sel].female1 | 9.61600 | 9.53100 | 0.884 |
| selectivity[line_home_sel].female2 | 3.87500 | 3.68500 | 4.903 |
| selectivity[line_spawn_sel].male1 | 18.30000 | 14.04000 | 23.279 |
| selectivity[line_spawn_sel].male2 | 13.67000 | 10.01000 | 26.774 |
| selectivity[line_spawn_sel].male3 | 1.86800 | 1.17300 | 37.206 |
| selectivity[line_spawn_sel].female1 | 9.74600 | 9.71300 | 0.339 |
| selectivity[line_spawn_sel].female2 | 3.00800 | 2.89400 | 3.790 |
| recruitment.YCS1 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS2 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS3 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS4 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS5 | 0.48500 | 0.46620 | 3.876 |
| recruitment.YCS6 | 0.45830 | 0.45010 | 1.789 |
| recruitment.YCS7 | 0.56860 | 0.56470 | 0.686 |
| recruitment.YCS8 | 0.56670 | 0.56670 | 0.000 |
| recruitment.YCS9 | 0.48610 | 0.49070 | -0.946 |
| recruitment.YCS10 | 0.55500 | 0.56720 | -2.198 |
| recruitment.YCS11 | 0.56320 | 0.57880 | -2.770 |
| recruitment.YCS12 | 0.68760 | 0.71090 | -3.389 |
| recruitment.YCS13 | 0.62030 | 0.63610 | -2.547 |
| recruitment.YCS14 | 0.79060 | 0.80840 | -2.251 |
| recruitment.YCS15 | 0.46430 | 0.46930 | -1.077 |
| recruitment.YCS16 | 0.70080 | 0.70730 | -0.928 |
| recruitment.YCS17 | 0.41010 | 0.41050 | -0.098 |
| recruitment.YCS18 | 0.51500 | 0.51450 | 0.097 |
| recruitment.YCS19 | 0.34160 | 0.34220 | -0.176 |
| recruitment.YCS20 | 0.34830 | 0.34730 | 0.287 |
| recruitment.YCS21 | 0.43610 | 0.43820 | -0.482 |
| recruitment.YCS22 | 0.48060 | 0.47500 | 1.165 |
| recruitment.YCS23 | 0.45220 | 0.45130 | 0.199 |
| recruitment.YCS24 | 0.49170 | 0.49480 | -0.630 |
| recruitment.YCS25 | 0.46910 | 0.47070 | -0.341 |
| recruitment.YCS26 | 0.79930 | 0.80490 | -0.701 |
| recruitment.YCS27 | 0.79010 | 0.79210 | -0.253 |
| recruitment.YCS28 | 0.82610 | 0.83110 | -0.605 |
| recruitment.YCS29 | 0.70760 | 0.71250 | -0.692 |
| recruitment.YCS30 | 0.55170 | 0.55430 | -0.471 |
| recruitment.YCS31 | 0.47520 | 0.47680 | -0.337 |
| recruitment.YCS32 | 0.46170 | 0.46140 | 0.065 |
| recruitment.YCS33 | 0.55500 | 0.55430 | 0.126 |
| recruitment.YCS34 | 0.54670 | 0.54210 | 0.841 |
| recruitment.YCS35 | 0.48320 | 0.48250 | 0.145 |
| recruitment.YCS36 | 0.55020 | 0.54990 | 0.055 |
| recruitment.YCS37 | 0.61530 | 0.61580 | -0.081 |
| recruitment.YCS38 | 0.77570 | 0.77470 | 0.129 |
| recruitment.YCS39 | 0.63110 | 0.63060 | 0.079 |
| recruitment.YCS40 | 0.77550 | 0.77350 | 0.258 |
| recruitment.YCS41 | 0.64290 | 0.63930 | 0.560 |
| recruitment.YCS42 | 0.70670 | 0.69940 | 1.033 |
| recruitment.YCS43 | 0.65430 | 0.64860 | 0.871 |
| recruitment.YCS44 | 0.51000 | 0.50620 | 0.745 |
| recruitment.YCS45 | 0.58620 | 0.58730 | -0.188 |
| recruitment.YCS46 | 0.60350 | 0.58930 | 2.353 |
| recruitment.YCS47 | 0.57680 | 0.57450 | 0.399 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| process[Recruitment].b0 | 308529.00000 | 308529.00000 | 310577.00000 | 308529.00000 | 308529.00000 | 310577.00000 |
| catchability[summerTANq].q | 0.09137 | 0.09137 | 0.09106 | 0.09137 | 0.09137 | 0.09106 |
| catchability[autumnTANq].q | 0.12607 | 0.12607 | 0.12594 | 0.12607 | 0.12607 | 0.12594 |
| selectivity[M_all].x0 | 12.49650 | 12.49650 | 12.98440 | 12.49650 | 12.49650 | 12.98440 |
| selectivity[M_all].y0 | 0.13262 | 0.13262 | 0.12797 | 0.13262 | 0.13262 | 0.12797 |
| selectivity[M_all].y1 | 0.38280 | 0.38280 | 0.44726 | 0.38280 | 0.38280 | 0.44726 |
| selectivity[M_all].y2 | 0.35113 | 0.35113 | 0.35373 | 0.35113 | 0.35113 | 0.35373 |
| selectivity[summerTANSel_m].a50 | 4.73988 | 4.73988 | 4.87645 | 4.73988 | 4.73988 | 4.87645 |
| selectivity[summerTANSel_m].ato95 | 1.74459 | 1.74459 | 1.77029 | 1.74459 | 1.74459 | 1.77029 |
| selectivity[summerTANSel_m].alpha | 0.60995 | 0.60995 | 0.60184 | 0.60995 | 0.60995 | 0.60184 |
| selectivity[summerTANSel_f].a50 | 5.46111 | 5.46111 | 5.60807 | 5.46111 | 5.46111 | 5.60807 |
| selectivity[summerTANSel_f].ato95 | 2.20340 | 2.20340 | 2.21420 | 2.20340 | 2.20340 | 2.21420 |
| selectivity[autumnTANSel_m].a50 | 5.50982 | 5.50982 | 5.63972 | 5.50982 | 5.50982 | 5.63972 |
| selectivity[autumnTANSel_m].ato95 | 2.31271 | 2.31271 | 2.29781 | 2.31271 | 2.31271 | 2.29781 |
| selectivity[autumnTANSel_m].alpha | 0.94173 | 0.94173 | 0.93320 | 0.94173 | 0.94173 | 0.93320 |
| selectivity[autumnTANSel_f].a50 | 5.91574 | 5.91574 | 6.05848 | 5.91574 | 5.91574 | 6.05848 |
| selectivity[autumnTANSel_f].ato95 | 2.77020 | 2.77020 | 2.73846 | 2.77020 | 2.77020 | 2.73846 |
| selectivity[trwlFSel_m].mu | 8.36919 | 8.36919 | 8.40239 | 8.36919 | 8.36919 | 8.40239 |
| selectivity[trwlFSel_m].sigma_l | 1.97023 | 1.97023 | 1.94735 | 1.97023 | 1.97023 | 1.94735 |
| selectivity[trwlFSel_m].sigma_r | 61.52290 | 61.52290 | 200.00000 | 61.52290 | 61.52290 | 200.00000 |
| selectivity[trwlFSel_m].alpha | 1.04276 | 1.04276 | 1.02085 | 1.04276 | 1.04276 | 1.02085 |
| selectivity[trwlFSel_f].mu | 8.65854 | 8.65854 | 8.73949 | 8.65854 | 8.65854 | 8.73949 |
| selectivity[trwlFSel_f].sigma_l | 2.09656 | 2.09656 | 2.08849 | 2.09656 | 2.09656 | 2.08849 |
| selectivity[trwlFSel_f].sigma_r | 43.16390 | 43.16390 | 40.59470 | 43.16390 | 43.16390 | 40.59470 |
| selectivity[lineHomeFSel_m].a50 | 11.45600 | 11.45600 | 8.60835 | 11.45600 | 11.45600 | 8.60835 |
| selectivity[lineHomeFSel_m].ato95 | 8.59958 | 8.59958 | 4.59169 | 8.59958 | 8.59958 | 4.59169 |
| selectivity[lineHomeFSel_m].alpha | 0.38022 | 0.38022 | 0.26993 | 0.38022 | 0.38022 | 0.26993 |
| selectivity[lineHomeFSel_f].a50 | 9.61476 | 9.61476 | 9.53352 | 9.61476 | 9.61476 | 9.53352 |
| selectivity[lineHomeFSel_f].ato95 | 3.87014 | 3.87014 | 3.69064 | 3.87014 | 3.87014 | 3.69064 |
| selectivity[lineSpawnFSel_m].a50 | 18.21510 | 18.21510 | 14.04670 | 18.21510 | 18.21510 | 14.04670 |
| selectivity[lineSpawnFSel_m].ato95 | 13.59950 | 13.59950 | 10.02610 | 13.59950 | 13.59950 | 10.02610 |
| selectivity[lineSpawnFSel_m].alpha | 1.85634 | 1.85634 | 1.17449 | 1.85634 | 1.85634 | 1.17449 |
| selectivity[lineSpawnFSel_f].a50 | 9.73862 | 9.73862 | 9.71478 | 9.73862 | 9.73862 | 9.71478 |
| selectivity[lineSpawnFSel_f].ato95 | 2.99387 | 2.99387 | 2.89670 | 2.99387 | 2.99387 | 2.89670 |
| process[Recruitment].ycs_values{1972} | 0.48379 | 0.48379 | 0.46642 | 0.48379 | 0.48379 | 0.46642 |
| process[Recruitment].ycs_values{1973} | 0.46122 | 0.46122 | 0.45020 | 0.46122 | 0.46122 | 0.45020 |
| process[Recruitment].ycs_values{1974} | 0.56837 | 0.56837 | 0.56454 | 0.56837 | 0.56837 | 0.56454 |
| process[Recruitment].ycs_values{1975} | 0.56652 | 0.56652 | 0.56688 | 0.56652 | 0.56652 | 0.56688 |
| process[Recruitment].ycs_values{1976} | 0.48635 | 0.48635 | 0.49081 | 0.48635 | 0.48635 | 0.49081 |
| process[Recruitment].ycs_values{1977} | 0.55413 | 0.55413 | 0.56717 | 0.55413 | 0.55413 | 0.56717 |
| process[Recruitment].ycs_values{1978} | 0.56316 | 0.56316 | 0.57855 | 0.56316 | 0.56316 | 0.57855 |
| process[Recruitment].ycs_values{1979} | 0.68899 | 0.68899 | 0.71094 | 0.68899 | 0.68899 | 0.71094 |
| process[Recruitment].ycs_values{1980} | 0.62093 | 0.62093 | 0.63619 | 0.62093 | 0.62093 | 0.63619 |
| process[Recruitment].ycs_values{1981} | 0.79247 | 0.79247 | 0.80802 | 0.79247 | 0.79247 | 0.80802 |
| process[Recruitment].ycs_values{1982} | 0.46507 | 0.46507 | 0.46928 | 0.46507 | 0.46507 | 0.46928 |
| process[Recruitment].ycs_values{1983} | 0.69967 | 0.69967 | 0.70706 | 0.69967 | 0.69967 | 0.70706 |
| process[Recruitment].ycs_values{1984} | 0.40995 | 0.40995 | 0.41042 | 0.40995 | 0.40995 | 0.41042 |
| process[Recruitment].ycs_values{1985} | 0.51540 | 0.51540 | 0.51456 | 0.51540 | 0.51540 | 0.51456 |
| process[Recruitment].ycs_values{1986} | 0.34131 | 0.34131 | 0.34212 | 0.34131 | 0.34131 | 0.34212 |
| process[Recruitment].ycs_values{1987} | 0.34760 | 0.34760 | 0.34728 | 0.34760 | 0.34760 | 0.34728 |
| process[Recruitment].ycs_values{1988} | 0.43791 | 0.43791 | 0.43826 | 0.43791 | 0.43791 | 0.43826 |
| process[Recruitment].ycs_values{1989} | 0.47924 | 0.47924 | 0.47500 | 0.47924 | 0.47924 | 0.47500 |
| process[Recruitment].ycs_values{1990} | 0.45181 | 0.45181 | 0.45133 | 0.45181 | 0.45181 | 0.45133 |
| process[Recruitment].ycs_values{1991} | 0.49264 | 0.49264 | 0.49479 | 0.49264 | 0.49264 | 0.49479 |
| process[Recruitment].ycs_values{1992} | 0.46918 | 0.46918 | 0.47070 | 0.46918 | 0.46918 | 0.47070 |
| process[Recruitment].ycs_values{1993} | 0.79791 | 0.79791 | 0.80486 | 0.79791 | 0.79791 | 0.80486 |
| process[Recruitment].ycs_values{1994} | 0.79128 | 0.79128 | 0.79208 | 0.79128 | 0.79128 | 0.79208 |
| process[Recruitment].ycs_values{1995} | 0.82538 | 0.82538 | 0.83109 | 0.82538 | 0.82538 | 0.83109 |
| process[Recruitment].ycs_values{1996} | 0.70728 | 0.70728 | 0.71248 | 0.70728 | 0.70728 | 0.71248 |
| process[Recruitment].ycs_values{1997} | 0.55206 | 0.55206 | 0.55427 | 0.55206 | 0.55206 | 0.55427 |
| process[Recruitment].ycs_values{1998} | 0.47508 | 0.47508 | 0.47683 | 0.47508 | 0.47508 | 0.47683 |
| process[Recruitment].ycs_values{1999} | 0.46119 | 0.46119 | 0.46140 | 0.46119 | 0.46119 | 0.46140 |
| process[Recruitment].ycs_values{2000} | 0.55575 | 0.55575 | 0.55442 | 0.55575 | 0.55575 | 0.55442 |
| process[Recruitment].ycs_values{2001} | 0.54546 | 0.54546 | 0.54206 | 0.54546 | 0.54546 | 0.54206 |
| process[Recruitment].ycs_values{2002} | 0.48373 | 0.48373 | 0.48263 | 0.48373 | 0.48373 | 0.48263 |
| process[Recruitment].ycs_values{2003} | 0.54989 | 0.54989 | 0.54993 | 0.54989 | 0.54989 | 0.54993 |
| process[Recruitment].ycs_values{2004} | 0.61418 | 0.61418 | 0.61578 | 0.61418 | 0.61418 | 0.61578 |
| process[Recruitment].ycs_values{2005} | 0.77712 | 0.77712 | 0.77462 | 0.77712 | 0.77712 | 0.77462 |
| process[Recruitment].ycs_values{2006} | 0.63130 | 0.63130 | 0.63052 | 0.63130 | 0.63130 | 0.63052 |
| process[Recruitment].ycs_values{2007} | 0.77377 | 0.77377 | 0.77345 | 0.77377 | 0.77377 | 0.77345 |
| process[Recruitment].ycs_values{2008} | 0.64251 | 0.64251 | 0.63928 | 0.64251 | 0.64251 | 0.63928 |
| process[Recruitment].ycs_values{2009} | 0.70649 | 0.70649 | 0.69935 | 0.70649 | 0.70649 | 0.69935 |
| process[Recruitment].ycs_values{2010} | 0.65312 | 0.65312 | 0.64871 | 0.65312 | 0.65312 | 0.64871 |
| process[Recruitment].ycs_values{2011} | 0.51136 | 0.51136 | 0.50623 | 0.51136 | 0.51136 | 0.50623 |
| process[Recruitment].ycs_values{2012} | 0.58556 | 0.58556 | 0.58738 | 0.58556 | 0.58556 | 0.58738 |
| process[Recruitment].ycs_values{2013} | 0.60064 | 0.60064 | 0.58912 | 0.60064 | 0.60064 | 0.58912 |
| process[Recruitment].ycs_values{2014} | 0.57601 | 0.57601 | 0.57450 | 0.57601 | 0.57601 | 0.57450 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| process[Recruitment].b0 | 0.000 | 0.000 | -0.664 | 0.000 | 0.000 | -0.664 |
| catchability[summerTANq].q | 0.000 | 0.000 | 0.344 | 0.000 | 0.000 | 0.344 |
| catchability[autumnTANq].q | 0.000 | 0.000 | 0.105 | 0.000 | 0.000 | 0.105 |
| selectivity[M_all].x0 | 0.000 | 0.000 | -3.904 | 0.000 | 0.000 | -3.904 |
| selectivity[M_all].y0 | 0.000 | 0.000 | 3.510 | 0.000 | 0.000 | 3.510 |
| selectivity[M_all].y1 | 0.000 | 0.000 | -16.840 | 0.000 | 0.000 | -16.840 |
| selectivity[M_all].y2 | 0.000 | 0.000 | -0.741 | 0.000 | 0.000 | -0.741 |
| selectivity[summerTANSel_m].a50 | 0.000 | 0.000 | -2.881 | 0.000 | 0.000 | -2.881 |
| selectivity[summerTANSel_m].ato95 | 0.000 | 0.000 | -1.473 | 0.000 | 0.000 | -1.473 |
| selectivity[summerTANSel_m].alpha | 0.000 | 0.000 | 1.329 | 0.000 | 0.000 | 1.329 |
| selectivity[summerTANSel_f].a50 | 0.000 | 0.000 | -2.691 | 0.000 | 0.000 | -2.691 |
| selectivity[summerTANSel_f].ato95 | 0.000 | 0.000 | -0.490 | 0.000 | 0.000 | -0.490 |
| selectivity[autumnTANSel_m].a50 | 0.000 | 0.000 | -2.358 | 0.000 | 0.000 | -2.358 |
| selectivity[autumnTANSel_m].ato95 | 0.000 | 0.000 | 0.644 | 0.000 | 0.000 | 0.644 |
| selectivity[autumnTANSel_m].alpha | 0.000 | 0.000 | 0.906 | 0.000 | 0.000 | 0.906 |
| selectivity[autumnTANSel_f].a50 | 0.000 | 0.000 | -2.413 | 0.000 | 0.000 | -2.413 |
| selectivity[autumnTANSel_f].ato95 | 0.000 | 0.000 | 1.146 | 0.000 | 0.000 | 1.146 |
| selectivity[trwlFSel_m].mu | 0.000 | 0.000 | -0.397 | 0.000 | 0.000 | -0.397 |
| selectivity[trwlFSel_m].sigma_l | 0.000 | 0.000 | 1.161 | 0.000 | 0.000 | 1.161 |
| selectivity[trwlFSel_m].sigma_r | 0.000 | 0.000 | -225.082 | 0.000 | 0.000 | -225.082 |
| selectivity[trwlFSel_m].alpha | 0.000 | 0.000 | 2.101 | 0.000 | 0.000 | 2.101 |
| selectivity[trwlFSel_f].mu | 0.000 | 0.000 | -0.935 | 0.000 | 0.000 | -0.935 |
| selectivity[trwlFSel_f].sigma_l | 0.000 | 0.000 | 0.385 | 0.000 | 0.000 | 0.385 |
| selectivity[trwlFSel_f].sigma_r | 0.000 | 0.000 | 5.952 | 0.000 | 0.000 | 5.952 |
| selectivity[lineHomeFSel_m].a50 | 0.000 | 0.000 | 24.857 | 0.000 | 0.000 | 24.857 |
| selectivity[lineHomeFSel_m].ato95 | 0.000 | 0.000 | 46.606 | 0.000 | 0.000 | 46.606 |
| selectivity[lineHomeFSel_m].alpha | 0.000 | 0.000 | 29.007 | 0.000 | 0.000 | 29.007 |
| selectivity[lineHomeFSel_f].a50 | 0.000 | 0.000 | 0.845 | 0.000 | 0.000 | 0.845 |
| selectivity[lineHomeFSel_f].ato95 | 0.000 | 0.000 | 4.638 | 0.000 | 0.000 | 4.638 |
| selectivity[lineSpawnFSel_m].a50 | 0.000 | 0.000 | 22.884 | 0.000 | 0.000 | 22.884 |
| selectivity[lineSpawnFSel_m].ato95 | 0.000 | 0.000 | 26.276 | 0.000 | 0.000 | 26.276 |
| selectivity[lineSpawnFSel_m].alpha | 0.000 | 0.000 | 36.731 | 0.000 | 0.000 | 36.731 |
| selectivity[lineSpawnFSel_f].a50 | 0.000 | 0.000 | 0.245 | 0.000 | 0.000 | 0.245 |
| selectivity[lineSpawnFSel_f].ato95 | 0.000 | 0.000 | 3.246 | 0.000 | 0.000 | 3.246 |
| process[Recruitment].ycs_values{1972} | 0.000 | 0.000 | 3.589 | 0.000 | 0.000 | 3.589 |
| process[Recruitment].ycs_values{1973} | 0.000 | 0.000 | 2.389 | 0.000 | 0.000 | 2.389 |
| process[Recruitment].ycs_values{1974} | 0.000 | 0.000 | 0.675 | 0.000 | 0.000 | 0.675 |
| process[Recruitment].ycs_values{1975} | 0.000 | 0.000 | -0.064 | 0.000 | 0.000 | -0.064 |
| process[Recruitment].ycs_values{1976} | 0.000 | 0.000 | -0.916 | 0.000 | 0.000 | -0.916 |
| process[Recruitment].ycs_values{1977} | 0.000 | 0.000 | -2.353 | 0.000 | 0.000 | -2.353 |
| process[Recruitment].ycs_values{1978} | 0.000 | 0.000 | -2.733 | 0.000 | 0.000 | -2.733 |
| process[Recruitment].ycs_values{1979} | 0.000 | 0.000 | -3.185 | 0.000 | 0.000 | -3.185 |
| process[Recruitment].ycs_values{1980} | 0.000 | 0.000 | -2.457 | 0.000 | 0.000 | -2.457 |
| process[Recruitment].ycs_values{1981} | 0.000 | 0.000 | -1.962 | 0.000 | 0.000 | -1.962 |
| process[Recruitment].ycs_values{1982} | 0.000 | 0.000 | -0.906 | 0.000 | 0.000 | -0.906 |
| process[Recruitment].ycs_values{1983} | 0.000 | 0.000 | -1.056 | 0.000 | 0.000 | -1.056 |
| process[Recruitment].ycs_values{1984} | 0.000 | 0.000 | -0.115 | 0.000 | 0.000 | -0.115 |
| process[Recruitment].ycs_values{1985} | 0.000 | 0.000 | 0.162 | 0.000 | 0.000 | 0.162 |
| process[Recruitment].ycs_values{1986} | 0.000 | 0.000 | -0.236 | 0.000 | 0.000 | -0.236 |
| process[Recruitment].ycs_values{1987} | 0.000 | 0.000 | 0.091 | 0.000 | 0.000 | 0.091 |
| process[Recruitment].ycs_values{1988} | 0.000 | 0.000 | -0.079 | 0.000 | 0.000 | -0.079 |
| process[Recruitment].ycs_values{1989} | 0.000 | 0.000 | 0.884 | 0.000 | 0.000 | 0.884 |
| process[Recruitment].ycs_values{1990} | 0.000 | 0.000 | 0.106 | 0.000 | 0.000 | 0.106 |
| process[Recruitment].ycs_values{1991} | 0.000 | 0.000 | -0.436 | 0.000 | 0.000 | -0.436 |
| process[Recruitment].ycs_values{1992} | 0.000 | 0.000 | -0.325 | 0.000 | 0.000 | -0.325 |
| process[Recruitment].ycs_values{1993} | 0.000 | 0.000 | -0.871 | 0.000 | 0.000 | -0.871 |
| process[Recruitment].ycs_values{1994} | 0.000 | 0.000 | -0.102 | 0.000 | 0.000 | -0.102 |
| process[Recruitment].ycs_values{1995} | 0.000 | 0.000 | -0.691 | 0.000 | 0.000 | -0.691 |
| process[Recruitment].ycs_values{1996} | 0.000 | 0.000 | -0.736 | 0.000 | 0.000 | -0.736 |
| process[Recruitment].ycs_values{1997} | 0.000 | 0.000 | -0.400 | 0.000 | 0.000 | -0.400 |
| process[Recruitment].ycs_values{1998} | 0.000 | 0.000 | -0.368 | 0.000 | 0.000 | -0.368 |
| process[Recruitment].ycs_values{1999} | 0.000 | 0.000 | -0.045 | 0.000 | 0.000 | -0.045 |
| process[Recruitment].ycs_values{2000} | 0.000 | 0.000 | 0.239 | 0.000 | 0.000 | 0.239 |
| process[Recruitment].ycs_values{2001} | 0.000 | 0.000 | 0.623 | 0.000 | 0.000 | 0.623 |
| process[Recruitment].ycs_values{2002} | 0.000 | 0.000 | 0.227 | 0.000 | 0.000 | 0.227 |
| process[Recruitment].ycs_values{2003} | 0.000 | 0.000 | -0.008 | 0.000 | 0.000 | -0.008 |
| process[Recruitment].ycs_values{2004} | 0.000 | 0.000 | -0.260 | 0.000 | 0.000 | -0.260 |
| process[Recruitment].ycs_values{2005} | 0.000 | 0.000 | 0.321 | 0.000 | 0.000 | 0.321 |
| process[Recruitment].ycs_values{2006} | 0.000 | 0.000 | 0.123 | 0.000 | 0.000 | 0.123 |
| process[Recruitment].ycs_values{2007} | 0.000 | 0.000 | 0.042 | 0.000 | 0.000 | 0.042 |
| process[Recruitment].ycs_values{2008} | 0.000 | 0.000 | 0.503 | 0.000 | 0.000 | 0.503 |
| process[Recruitment].ycs_values{2009} | 0.000 | 0.000 | 1.010 | 0.000 | 0.000 | 1.010 |
| process[Recruitment].ycs_values{2010} | 0.000 | 0.000 | 0.674 | 0.000 | 0.000 | 0.674 |
| process[Recruitment].ycs_values{2011} | 0.000 | 0.000 | 1.004 | 0.000 | 0.000 | 1.004 |
| process[Recruitment].ycs_values{2012} | 0.000 | 0.000 | -0.311 | 0.000 | 0.000 | -0.311 |
| process[Recruitment].ycs_values{2013} | 0.000 | 0.000 | 1.918 | 0.000 | 0.000 | 1.918 |
| process[Recruitment].ycs_values{2014} | 0.000 | 0.000 | 0.262 | 0.000 | 0.000 | 0.262 |
| Component | Base_Model | Sensitivity_1 |
|---|---|---|
| Tangaroa_bio_autumn | -6.829 | -6.834 |
| Tangaroa_bio_summer | -23.880 | -23.960 |
| Tangaroa_propn_at_age_aut | 175.700 | 175.800 |
| Tangaroa_propn_at_age_summer | 835.900 | 835.600 |
| longline_Campbell_home_propn_at_age | 275.700 | 275.400 |
| longline_Puysegur_spawn_propn_at_age | 363.300 | 363.300 |
| trawl_observer_propn_at_age | 682.600 | 682.300 |
| prior_on_q[tan_sum].q | -2.364 | -2.366 |
| prior_on_q[tan_aut].q | -2.033 | -2.037 |
| prior_on_initialization.B0 | 12.640 | 12.650 |
| prior_on_natural_mortality.ogive_all | 0.000 | 0.000 |
| prior_on_selectivity[surveysum_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[surveysum_sel].female | 0.000 | 0.000 |
| prior_on_selectivity[surveyaut_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[surveyaut_sel].female | 0.000 | 0.000 |
| prior_on_selectivity[trawl_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[trawl_sel].female | 0.000 | 0.000 |
| prior_on_selectivity[line_home_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[line_home_sel].female | 0.000 | 0.000 |
| prior_on_selectivity[line_spawn_sel].male | 0.000 | 0.000 |
| prior_on_selectivity[line_spawn_sel].female | 0.000 | 0.000 |
| prior_on_recruitment.YCS | -14.440 | -14.370 |
| clp1 | 0.000 | 0.000 |
| clp2 | 0.000 | 0.000 |
| clp3 | 0.000 | 0.000 |
| YCS_average_1 | 0.908 | 0.904 |
| Total | 2297.000 | 2296.000 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| observation->summerTANbiomass->1992 | -1.693 | -1.693 | -1.679 | -1.693 | -1.693 | -1.679 |
| observation->summerTANbiomass->1993 | -1.353 | -1.353 | -1.331 | -1.353 | -1.353 | -1.331 |
| observation->summerTANbiomass->1994 | -0.975 | -0.975 | -0.991 | -0.975 | -0.975 | -0.991 |
| observation->summerTANbiomass->2001 | 0.430 | 0.430 | 0.354 | 0.430 | 0.430 | 0.354 |
| observation->summerTANbiomass->2002 | -1.778 | -1.778 | -1.786 | -1.778 | -1.778 | -1.786 |
| observation->summerTANbiomass->2003 | -1.685 | -1.685 | -1.693 | -1.685 | -1.685 | -1.693 |
| observation->summerTANbiomass->2004 | -1.598 | -1.598 | -1.586 | -1.598 | -1.598 | -1.586 |
| observation->summerTANbiomass->2005 | -1.657 | -1.657 | -1.656 | -1.657 | -1.657 | -1.656 |
| observation->summerTANbiomass->2006 | -1.143 | -1.143 | -1.153 | -1.143 | -1.143 | -1.153 |
| observation->summerTANbiomass->2007 | -1.162 | -1.162 | -1.180 | -1.162 | -1.162 | -1.180 |
| observation->summerTANbiomass->2008 | -1.568 | -1.568 | -1.553 | -1.568 | -1.568 | -1.553 |
| observation->summerTANbiomass->2009 | -1.700 | -1.700 | -1.705 | -1.700 | -1.700 | -1.705 |
| observation->summerTANbiomass->2010 | -1.672 | -1.672 | -1.678 | -1.672 | -1.672 | -1.678 |
| observation->summerTANbiomass->2012 | -1.554 | -1.554 | -1.558 | -1.554 | -1.554 | -1.558 |
| observation->summerTANbiomass->2013 | -1.669 | -1.669 | -1.667 | -1.669 | -1.669 | -1.667 |
| observation->summerTANbiomass->2015 | -1.582 | -1.582 | -1.570 | -1.582 | -1.582 | -1.570 |
| observation->summerTANbiomass->2017 | -1.526 | -1.526 | -1.528 | -1.526 | -1.526 | -1.528 |
| observation->Tangaroa_propn_at_age_summer->1990 | 44.218 | 44.218 | 44.393 | 44.218 | 44.218 | 44.393 |
| observation->Tangaroa_propn_at_age_summer->1992 | 51.993 | 51.993 | 51.753 | 51.993 | 51.993 | 51.753 |
| observation->Tangaroa_propn_at_age_summer->1993 | 50.200 | 50.200 | 50.168 | 50.200 | 50.200 | 50.168 |
| observation->Tangaroa_propn_at_age_summer->1994 | 49.743 | 49.743 | 49.785 | 49.743 | 49.743 | 49.785 |
| observation->Tangaroa_propn_at_age_summer->2001 | 48.355 | 48.355 | 48.237 | 48.355 | 48.355 | 48.237 |
| observation->Tangaroa_propn_at_age_summer->2002 | 47.830 | 47.830 | 47.879 | 47.830 | 47.830 | 47.879 |
| observation->Tangaroa_propn_at_age_summer->2003 | 48.442 | 48.442 | 48.620 | 48.442 | 48.442 | 48.620 |
| observation->Tangaroa_propn_at_age_summer->2004 | 44.823 | 44.823 | 44.865 | 44.823 | 44.823 | 44.865 |
| observation->Tangaroa_propn_at_age_summer->2005 | 43.097 | 43.097 | 43.117 | 43.097 | 43.097 | 43.117 |
| observation->Tangaroa_propn_at_age_summer->2006 | 43.891 | 43.891 | 44.058 | 43.891 | 43.891 | 44.058 |
| observation->Tangaroa_propn_at_age_summer->2007 | 41.848 | 41.848 | 41.841 | 41.848 | 41.848 | 41.841 |
| observation->Tangaroa_propn_at_age_summer->2008 | 45.225 | 45.225 | 45.267 | 45.225 | 45.225 | 45.267 |
| observation->Tangaroa_propn_at_age_summer->2009 | 46.844 | 46.844 | 46.806 | 46.844 | 46.844 | 46.806 |
| observation->Tangaroa_propn_at_age_summer->2010 | 47.128 | 47.128 | 47.202 | 47.128 | 47.128 | 47.202 |
| observation->Tangaroa_propn_at_age_summer->2012 | 44.353 | 44.353 | 44.183 | 44.353 | 44.353 | 44.183 |
| observation->Tangaroa_propn_at_age_summer->2013 | 47.251 | 47.251 | 47.021 | 47.251 | 47.251 | 47.021 |
| observation->Tangaroa_propn_at_age_summer->2015 | 46.473 | 46.473 | 46.342 | 46.473 | 46.473 | 46.342 |
| observation->Tangaroa_propn_at_age_summer->2017 | 44.182 | 44.182 | 44.082 | 44.182 | 44.182 | 44.082 |
| observation->autumnTANbiomass->1992 | -1.558 | -1.558 | -1.572 | -1.558 | -1.558 | -1.572 |
| observation->autumnTANbiomass->1993 | -1.741 | -1.741 | -1.733 | -1.741 | -1.741 | -1.733 |
| observation->autumnTANbiomass->1996 | -1.779 | -1.779 | -1.779 | -1.779 | -1.779 | -1.779 |
| observation->autumnTANbiomass->1998 | -1.750 | -1.750 | -1.750 | -1.750 | -1.750 | -1.750 |
| observation->Tangaroa_propn_at_age_autumn->1992 | 44.589 | 44.589 | 44.443 | 44.589 | 44.589 | 44.443 |
| observation->Tangaroa_propn_at_age_autumn->1993 | 45.484 | 45.484 | 45.443 | 45.484 | 45.484 | 45.443 |
| observation->Tangaroa_propn_at_age_autumn->1996 | 42.184 | 42.184 | 42.295 | 42.184 | 42.184 | 42.295 |
| observation->Tangaroa_propn_at_age_autumn->1998 | 43.464 | 43.464 | 43.610 | 43.464 | 43.464 | 43.610 |
| observation->trawl_propn_at_age->1992 | 36.067 | 36.067 | 35.944 | 36.067 | 36.067 | 35.944 |
| observation->trawl_propn_at_age->1993 | 27.516 | 27.516 | 27.476 | 27.516 | 27.516 | 27.476 |
| observation->trawl_propn_at_age->1994 | 25.819 | 25.819 | 25.764 | 25.819 | 25.819 | 25.764 |
| observation->trawl_propn_at_age->1996 | 28.394 | 28.394 | 28.397 | 28.394 | 28.394 | 28.397 |
| observation->trawl_propn_at_age->1998 | 24.915 | 24.915 | 24.910 | 24.915 | 24.915 | 24.910 |
| observation->trawl_propn_at_age->2001 | 24.580 | 24.580 | 24.542 | 24.580 | 24.580 | 24.542 |
| observation->trawl_propn_at_age->2002 | 26.770 | 26.770 | 26.792 | 26.770 | 26.770 | 26.792 |
| observation->trawl_propn_at_age->2003 | 34.564 | 34.564 | 34.511 | 34.564 | 34.564 | 34.511 |
| observation->trawl_propn_at_age->2004 | 29.608 | 29.608 | 29.608 | 29.608 | 29.608 | 29.608 |
| observation->trawl_propn_at_age->2005 | 30.147 | 30.147 | 30.166 | 30.147 | 30.147 | 30.166 |
| observation->trawl_propn_at_age->2006 | 33.629 | 33.629 | 33.714 | 33.629 | 33.629 | 33.714 |
| observation->trawl_propn_at_age->2007 | 26.635 | 26.635 | 26.588 | 26.635 | 26.635 | 26.588 |
| observation->trawl_propn_at_age->2008 | 27.059 | 27.059 | 27.076 | 27.059 | 27.059 | 27.076 |
| observation->trawl_propn_at_age->2009 | 37.213 | 37.213 | 37.237 | 37.213 | 37.213 | 37.237 |
| observation->trawl_propn_at_age->2010 | 30.648 | 30.648 | 30.694 | 30.648 | 30.648 | 30.694 |
| observation->trawl_propn_at_age->2011 | 31.266 | 31.266 | 31.260 | 31.266 | 31.266 | 31.260 |
| observation->trawl_propn_at_age->2012 | 32.325 | 32.325 | 32.366 | 32.325 | 32.325 | 32.366 |
| observation->trawl_propn_at_age->2013 | 37.072 | 37.072 | 36.943 | 37.072 | 37.072 | 36.943 |
| observation->trawl_propn_at_age->2014 | 30.640 | 30.640 | 30.642 | 30.640 | 30.640 | 30.642 |
| observation->trawl_propn_at_age->2015 | 33.456 | 33.456 | 33.474 | 33.456 | 33.456 | 33.474 |
| observation->trawl_propn_at_age->2016 | 36.532 | 36.532 | 36.482 | 36.532 | 36.532 | 36.482 |
| observation->trawl_propn_at_age->2017 | 37.755 | 37.755 | 37.708 | 37.755 | 37.755 | 37.708 |
| observation->longline_Campbell_home_propn_at_age->1999 | 45.348 | 45.348 | 45.256 | 45.348 | 45.348 | 45.256 |
| observation->longline_Campbell_home_propn_at_age->2001 | 31.965 | 31.965 | 31.950 | 31.965 | 31.965 | 31.950 |
| observation->longline_Campbell_home_propn_at_age->2003 | 28.644 | 28.644 | 28.675 | 28.644 | 28.644 | 28.675 |
| observation->longline_Campbell_home_propn_at_age->2005 | 32.750 | 32.750 | 32.776 | 32.750 | 32.750 | 32.776 |
| observation->longline_Campbell_home_propn_at_age->2009 | 26.033 | 26.033 | 25.611 | 26.033 | 26.033 | 25.611 |
| observation->longline_Campbell_home_propn_at_age->2010 | 24.302 | 24.302 | 24.461 | 24.302 | 24.302 | 24.461 |
| observation->longline_Campbell_home_propn_at_age->2011 | 28.878 | 28.878 | 28.935 | 28.878 | 28.878 | 28.935 |
| observation->longline_Campbell_home_propn_at_age->2012 | 32.258 | 32.258 | 32.389 | 32.258 | 32.258 | 32.389 |
| observation->longline_Campbell_home_propn_at_age->2014 | 25.495 | 25.495 | 25.357 | 25.495 | 25.495 | 25.357 |
| observation->longline_Puyseger_home_propn_at_age->2000 | 42.745 | 42.745 | 42.680 | 42.745 | 42.745 | 42.680 |
| observation->longline_Puyseger_home_propn_at_age->2001 | 31.770 | 31.770 | 31.900 | 31.770 | 31.770 | 31.900 |
| observation->longline_Puyseger_home_propn_at_age->2002 | 39.978 | 39.978 | 39.998 | 39.978 | 39.978 | 39.998 |
| observation->longline_Puyseger_home_propn_at_age->2003 | 43.527 | 43.527 | 43.511 | 43.527 | 43.527 | 43.511 |
| observation->longline_Puyseger_home_propn_at_age->2004 | 39.957 | 39.957 | 40.015 | 39.957 | 39.957 | 40.015 |
| observation->longline_Puyseger_home_propn_at_age->2005 | 25.532 | 25.532 | 25.358 | 25.532 | 25.532 | 25.358 |
| observation->longline_Puyseger_home_propn_at_age->2006 | 35.210 | 35.210 | 35.426 | 35.210 | 35.210 | 35.426 |
| observation->longline_Puyseger_home_propn_at_age->2007 | 33.981 | 33.981 | 33.782 | 33.981 | 33.981 | 33.782 |
| observation->longline_Puyseger_home_propn_at_age->2008 | 19.139 | 19.139 | 19.113 | 19.139 | 19.139 | 19.113 |
| observation->longline_Puyseger_home_propn_at_age->2010 | 24.238 | 24.238 | 24.366 | 24.238 | 24.238 | 24.366 |
| observation->longline_Puyseger_home_propn_at_age->2017 | 27.200 | 27.200 | 27.093 | 27.200 | 27.200 | 27.093 |
| prior->B0->process[Recruitment].b0 | 12.640 | 12.640 | 12.646 | 12.640 | 12.640 | 12.646 |
| prior->summerTANq->catchability[summerTANq].q | -2.363 | -2.363 | -2.365 | -2.363 | -2.363 | -2.365 |
| prior->autumnTANq->catchability[autumnTANq].q | -2.035 | -2.035 | -2.037 | -2.035 | -2.035 | -2.037 |
| prior->M_all_x0->selectivity[M_all].x0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->M_all_y0->selectivity[M_all].y0 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->M_all_y1->selectivity[M_all].y1 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->M_all_y2->selectivity[M_all].y2 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_m].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_m].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_f].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[summerTANSel_f].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_m].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_m].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_f].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[autumnTANSel_f].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_m].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_m].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_m].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_f].mu | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_f].sigma_l | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[trwlFSel_f].sigma_r | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_m].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_m].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_f].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineHomeFSel_f].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_m].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_m].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_m].alpha | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_f].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->selectivity[lineSpawnFSel_f].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->process[Recruitment].ycs_values{1972} | -0.378 | -0.378 | -0.365 | -0.378 | -0.378 | -0.365 |
| prior->process[Recruitment].ycs_values{1973} | -0.360 | -0.360 | -0.349 | -0.360 | -0.360 | -0.349 |
| prior->process[Recruitment].ycs_values{1974} | -0.397 | -0.397 | -0.398 | -0.397 | -0.397 | -0.398 |
| prior->process[Recruitment].ycs_values{1975} | -0.398 | -0.398 | -0.398 | -0.398 | -0.398 | -0.398 |
| prior->process[Recruitment].ycs_values{1976} | -0.380 | -0.380 | -0.383 | -0.380 | -0.380 | -0.383 |
| prior->process[Recruitment].ycs_values{1977} | -0.399 | -0.399 | -0.398 | -0.399 | -0.399 | -0.398 |
| prior->process[Recruitment].ycs_values{1978} | -0.398 | -0.398 | -0.396 | -0.398 | -0.398 | -0.396 |
| prior->process[Recruitment].ycs_values{1979} | -0.335 | -0.335 | -0.316 | -0.335 | -0.335 | -0.316 |
| prior->process[Recruitment].ycs_values{1980} | -0.380 | -0.380 | -0.372 | -0.380 | -0.380 | -0.372 |
| prior->process[Recruitment].ycs_values{1981} | -0.231 | -0.231 | -0.213 | -0.231 | -0.231 | -0.213 |
| prior->process[Recruitment].ycs_values{1982} | -0.364 | -0.364 | -0.367 | -0.364 | -0.364 | -0.367 |
| prior->process[Recruitment].ycs_values{1983} | -0.326 | -0.326 | -0.319 | -0.326 | -0.326 | -0.319 |
| prior->process[Recruitment].ycs_values{1984} | -0.291 | -0.291 | -0.292 | -0.291 | -0.291 | -0.292 |
| prior->process[Recruitment].ycs_values{1985} | -0.394 | -0.394 | -0.393 | -0.394 | -0.394 | -0.393 |
| prior->process[Recruitment].ycs_values{1986} | -0.114 | -0.114 | -0.117 | -0.114 | -0.114 | -0.117 |
| prior->process[Recruitment].ycs_values{1987} | -0.135 | -0.135 | -0.134 | -0.135 | -0.135 | -0.134 |
| prior->process[Recruitment].ycs_values{1988} | -0.334 | -0.334 | -0.334 | -0.334 | -0.334 | -0.334 |
| prior->process[Recruitment].ycs_values{1989} | -0.375 | -0.375 | -0.372 | -0.375 | -0.375 | -0.372 |
| prior->process[Recruitment].ycs_values{1990} | -0.350 | -0.350 | -0.350 | -0.350 | -0.350 | -0.350 |
| prior->process[Recruitment].ycs_values{1991} | -0.384 | -0.384 | -0.385 | -0.384 | -0.384 | -0.385 |
| prior->process[Recruitment].ycs_values{1992} | -0.367 | -0.367 | -0.369 | -0.367 | -0.367 | -0.369 |
| prior->process[Recruitment].ycs_values{1993} | -0.225 | -0.225 | -0.217 | -0.225 | -0.225 | -0.217 |
| prior->process[Recruitment].ycs_values{1994} | -0.233 | -0.233 | -0.232 | -0.233 | -0.233 | -0.232 |
| prior->process[Recruitment].ycs_values{1995} | -0.192 | -0.192 | -0.185 | -0.192 | -0.192 | -0.185 |
| prior->process[Recruitment].ycs_values{1996} | -0.319 | -0.319 | -0.315 | -0.319 | -0.319 | -0.315 |
| prior->process[Recruitment].ycs_values{1997} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->process[Recruitment].ycs_values{1998} | -0.372 | -0.372 | -0.373 | -0.372 | -0.372 | -0.373 |
| prior->process[Recruitment].ycs_values{1999} | -0.360 | -0.360 | -0.360 | -0.360 | -0.360 | -0.360 |
| prior->process[Recruitment].ycs_values{2000} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->process[Recruitment].ycs_values{2001} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->process[Recruitment].ycs_values{2002} | -0.378 | -0.378 | -0.377 | -0.378 | -0.378 | -0.377 |
| prior->process[Recruitment].ycs_values{2003} | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 | -0.399 |
| prior->process[Recruitment].ycs_values{2004} | -0.383 | -0.383 | -0.383 | -0.383 | -0.383 | -0.383 |
| prior->process[Recruitment].ycs_values{2005} | -0.249 | -0.249 | -0.251 | -0.249 | -0.249 | -0.251 |
| prior->process[Recruitment].ycs_values{2006} | -0.375 | -0.375 | -0.375 | -0.375 | -0.375 | -0.375 |
| prior->process[Recruitment].ycs_values{2007} | -0.252 | -0.252 | -0.253 | -0.252 | -0.252 | -0.253 |
| prior->process[Recruitment].ycs_values{2008} | -0.368 | -0.368 | -0.370 | -0.368 | -0.368 | -0.370 |
| prior->process[Recruitment].ycs_values{2009} | -0.320 | -0.320 | -0.326 | -0.320 | -0.320 | -0.326 |
| prior->process[Recruitment].ycs_values{2010} | -0.362 | -0.362 | -0.364 | -0.362 | -0.362 | -0.364 |
| prior->process[Recruitment].ycs_values{2011} | -0.392 | -0.392 | -0.390 | -0.392 | -0.392 | -0.390 |
| prior->process[Recruitment].ycs_values{2012} | -0.394 | -0.394 | -0.393 | -0.394 | -0.394 | -0.393 |
| prior->process[Recruitment].ycs_values{2013} | -0.389 | -0.389 | -0.393 | -0.389 | -0.389 | -0.393 |
| prior->process[Recruitment].ycs_values{2014} | -0.396 | -0.396 | -0.396 | -0.396 | -0.396 | -0.396 |
| additional_prior->YCS_average_1 | 0.908 | 0.908 | 0.904 | 0.908 | 0.908 | 0.904 |
| total_score | 2296.970 | 2296.970 | 2296.140 | 2296.970 | 2296.970 | 2296.140 |
## [1] "CASAL base model convergence information"
## [1] "fmm: have converged: t = 0.00198541 f = 2297.19"
## [2] "Successful convergence in optimise"
## [3] "Minimiser achieved convergence after 53 quasi-Newton iterations using 91 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "Minimiser convergence threshold: 1e-06"
## [2] "fmm: have converged: t = 4.51049e-07 f = 2296.34"
## [3] "Successful convergence in optimise"
## [4] "Minimiser achieved convergence after 189 quasi-Newton iterations using 303 objective function evaluations"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 0.00158129 f = 2296.97"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 0.00158129 f = 2296.97"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: have converged: t = 4.70876e-07 f = 2296.14"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## character(0)
## [1] "CASAL model warnings"
## NULL
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
## parameter estimate lower.bound upper.bound
## 1 selectivity[trawl_sel].male[3] 200 1 200
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
## [1] "obs sum total (0.9999) for year (1990) doesn't sum to 1.0"
## [2] "obs sum total (0.9998) for year (1993) doesn't sum to 1.0"
## [3] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [4] "obs sum total (1.0002) for year (2001) doesn't sum to 1.0"
## [5] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [6] "obs sum total (0.9999) for year (2004) doesn't sum to 1.0"
## [7] "obs sum total (1.0001) for year (2005) doesn't sum to 1.0"
## [8] "obs sum total (0.9999) for year (2007) doesn't sum to 1.0"
## [9] "obs sum total (0.9998) for year (2008) doesn't sum to 1.0"
## [10] "obs sum total (1.0001) for year (2010) doesn't sum to 1.0"
## [11] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [12] "obs sum total (1.0001) for year (2013) doesn't sum to 1.0"
## [13] "obs sum total (1.0002) for year (2015) doesn't sum to 1.0"
## [14] "obs sum total (1.0003) for year (2017) doesn't sum to 1.0"
## [15] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [16] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [17] "obs sum total (0.9998) for year (1998) doesn't sum to 1.0"
## [18] "obs sum total (1.0002) for year (1992) doesn't sum to 1.0"
## [19] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [20] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [21] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [22] "obs sum total (1.0002) for year (1998) doesn't sum to 1.0"
## [23] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [24] "obs sum total (1.0002) for year (2002) doesn't sum to 1.0"
## [25] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [26] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [27] "obs sum total (1.0002) for year (2006) doesn't sum to 1.0"
## [28] "obs sum total (0.9998) for year (2007) doesn't sum to 1.0"
## [29] "obs sum total (0.9999) for year (2008) doesn't sum to 1.0"
## [30] "obs sum total (1.0001) for year (2009) doesn't sum to 1.0"
## [31] "obs sum total (1.0002) for year (2010) doesn't sum to 1.0"
## [32] "obs sum total (0.9997) for year (2011) doesn't sum to 1.0"
## [33] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [34] "obs sum total (0.9999) for year (2014) doesn't sum to 1.0"
## [35] "obs sum total (1.0003) for year (2015) doesn't sum to 1.0"
## [36] "obs sum total (0.9998) for year (2016) doesn't sum to 1.0"
## [37] "obs sum total (0.9996) for year (2017) doesn't sum to 1.0"
## [38] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [40] "obs sum total (1.0002) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (1.0002) for year (2009) doesn't sum to 1.0"
## [42] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [43] "obs sum total (0.9999) for year (2011) doesn't sum to 1.0"
## [44] "obs sum total (0.9998) for year (2014) doesn't sum to 1.0"
## [45] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [46] "obs sum total (0.9999) for year (2002) doesn't sum to 1.0"
## [47] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [48] "obs sum total (1.0001) for year (2004) doesn't sum to 1.0"
## [49] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [50] "obs sum total (1.0004) for year (2008) doesn't sum to 1.0"
## [51] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [52] "obs sum total (1.0001) for year (2017) doesn't sum to 1.0"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
## [1] "obs sum total (0.9999) for year (1990) doesn't sum to 1.0"
## [2] "obs sum total (0.9998) for year (1993) doesn't sum to 1.0"
## [3] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [4] "obs sum total (1.0002) for year (2001) doesn't sum to 1.0"
## [5] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [6] "obs sum total (0.9999) for year (2004) doesn't sum to 1.0"
## [7] "obs sum total (1.0001) for year (2005) doesn't sum to 1.0"
## [8] "obs sum total (0.9999) for year (2007) doesn't sum to 1.0"
## [9] "obs sum total (0.9998) for year (2008) doesn't sum to 1.0"
## [10] "obs sum total (1.0001) for year (2010) doesn't sum to 1.0"
## [11] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [12] "obs sum total (1.0001) for year (2013) doesn't sum to 1.0"
## [13] "obs sum total (1.0002) for year (2015) doesn't sum to 1.0"
## [14] "obs sum total (1.0003) for year (2017) doesn't sum to 1.0"
## [15] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [16] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [17] "obs sum total (0.9998) for year (1998) doesn't sum to 1.0"
## [18] "obs sum total (1.0002) for year (1992) doesn't sum to 1.0"
## [19] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [20] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [21] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [22] "obs sum total (1.0002) for year (1998) doesn't sum to 1.0"
## [23] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [24] "obs sum total (1.0002) for year (2002) doesn't sum to 1.0"
## [25] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [26] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [27] "obs sum total (1.0002) for year (2006) doesn't sum to 1.0"
## [28] "obs sum total (0.9998) for year (2007) doesn't sum to 1.0"
## [29] "obs sum total (0.9999) for year (2008) doesn't sum to 1.0"
## [30] "obs sum total (1.0001) for year (2009) doesn't sum to 1.0"
## [31] "obs sum total (1.0002) for year (2010) doesn't sum to 1.0"
## [32] "obs sum total (0.9997) for year (2011) doesn't sum to 1.0"
## [33] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [34] "obs sum total (0.9999) for year (2014) doesn't sum to 1.0"
## [35] "obs sum total (1.0003) for year (2015) doesn't sum to 1.0"
## [36] "obs sum total (0.9998) for year (2016) doesn't sum to 1.0"
## [37] "obs sum total (0.9996) for year (2017) doesn't sum to 1.0"
## [38] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [40] "obs sum total (1.0002) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (1.0002) for year (2009) doesn't sum to 1.0"
## [42] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [43] "obs sum total (0.9999) for year (2011) doesn't sum to 1.0"
## [44] "obs sum total (0.9998) for year (2014) doesn't sum to 1.0"
## [45] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [46] "obs sum total (0.9999) for year (2002) doesn't sum to 1.0"
## [47] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [48] "obs sum total (1.0001) for year (2004) doesn't sum to 1.0"
## [49] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [50] "obs sum total (1.0004) for year (2008) doesn't sum to 1.0"
## [51] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [52] "obs sum total (1.0001) for year (2017) doesn't sum to 1.0"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
## [1] "obs sum total (0.9999) for year (1990) doesn't sum to 1.0"
## [2] "obs sum total (0.9998) for year (1993) doesn't sum to 1.0"
## [3] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [4] "obs sum total (1.0002) for year (2001) doesn't sum to 1.0"
## [5] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [6] "obs sum total (0.9999) for year (2004) doesn't sum to 1.0"
## [7] "obs sum total (1.0001) for year (2005) doesn't sum to 1.0"
## [8] "obs sum total (0.9999) for year (2007) doesn't sum to 1.0"
## [9] "obs sum total (0.9998) for year (2008) doesn't sum to 1.0"
## [10] "obs sum total (1.0001) for year (2010) doesn't sum to 1.0"
## [11] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [12] "obs sum total (1.0001) for year (2013) doesn't sum to 1.0"
## [13] "obs sum total (1.0002) for year (2015) doesn't sum to 1.0"
## [14] "obs sum total (1.0003) for year (2017) doesn't sum to 1.0"
## [15] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [16] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [17] "obs sum total (0.9998) for year (1998) doesn't sum to 1.0"
## [18] "obs sum total (1.0002) for year (1992) doesn't sum to 1.0"
## [19] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [20] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [21] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [22] "obs sum total (1.0002) for year (1998) doesn't sum to 1.0"
## [23] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [24] "obs sum total (1.0002) for year (2002) doesn't sum to 1.0"
## [25] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [26] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [27] "obs sum total (1.0002) for year (2006) doesn't sum to 1.0"
## [28] "obs sum total (0.9998) for year (2007) doesn't sum to 1.0"
## [29] "obs sum total (0.9999) for year (2008) doesn't sum to 1.0"
## [30] "obs sum total (1.0001) for year (2009) doesn't sum to 1.0"
## [31] "obs sum total (1.0002) for year (2010) doesn't sum to 1.0"
## [32] "obs sum total (0.9997) for year (2011) doesn't sum to 1.0"
## [33] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [34] "obs sum total (0.9999) for year (2014) doesn't sum to 1.0"
## [35] "obs sum total (1.0003) for year (2015) doesn't sum to 1.0"
## [36] "obs sum total (0.9998) for year (2016) doesn't sum to 1.0"
## [37] "obs sum total (0.9996) for year (2017) doesn't sum to 1.0"
## [38] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [40] "obs sum total (1.0002) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (1.0002) for year (2009) doesn't sum to 1.0"
## [42] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [43] "obs sum total (0.9999) for year (2011) doesn't sum to 1.0"
## [44] "obs sum total (0.9998) for year (2014) doesn't sum to 1.0"
## [45] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [46] "obs sum total (0.9999) for year (2002) doesn't sum to 1.0"
## [47] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [48] "obs sum total (1.0001) for year (2004) doesn't sum to 1.0"
## [49] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [50] "obs sum total (1.0004) for year (2008) doesn't sum to 1.0"
## [51] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [52] "obs sum total (1.0001) for year (2017) doesn't sum to 1.0"
## [53] "estimated parameter 'selectivity[trwlFSel_m].sigma_r' was within 0.001 of upper bound 200"
## [54] "estimated parameter 'selectivity[trwlFSel_m].sigma_r' was within 0.001 of upper bound 200"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
## [1] "obs sum total (0.9999) for year (1990) doesn't sum to 1.0"
## [2] "obs sum total (0.9998) for year (1993) doesn't sum to 1.0"
## [3] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [4] "obs sum total (1.0002) for year (2001) doesn't sum to 1.0"
## [5] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [6] "obs sum total (0.9999) for year (2004) doesn't sum to 1.0"
## [7] "obs sum total (1.0001) for year (2005) doesn't sum to 1.0"
## [8] "obs sum total (0.9999) for year (2007) doesn't sum to 1.0"
## [9] "obs sum total (0.9998) for year (2008) doesn't sum to 1.0"
## [10] "obs sum total (1.0001) for year (2010) doesn't sum to 1.0"
## [11] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [12] "obs sum total (1.0001) for year (2013) doesn't sum to 1.0"
## [13] "obs sum total (1.0002) for year (2015) doesn't sum to 1.0"
## [14] "obs sum total (1.0003) for year (2017) doesn't sum to 1.0"
## [15] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [16] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [17] "obs sum total (0.9998) for year (1998) doesn't sum to 1.0"
## [18] "obs sum total (1.0002) for year (1992) doesn't sum to 1.0"
## [19] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [20] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [21] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [22] "obs sum total (1.0002) for year (1998) doesn't sum to 1.0"
## [23] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [24] "obs sum total (1.0002) for year (2002) doesn't sum to 1.0"
## [25] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [26] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [27] "obs sum total (1.0002) for year (2006) doesn't sum to 1.0"
## [28] "obs sum total (0.9998) for year (2007) doesn't sum to 1.0"
## [29] "obs sum total (0.9999) for year (2008) doesn't sum to 1.0"
## [30] "obs sum total (1.0001) for year (2009) doesn't sum to 1.0"
## [31] "obs sum total (1.0002) for year (2010) doesn't sum to 1.0"
## [32] "obs sum total (0.9997) for year (2011) doesn't sum to 1.0"
## [33] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [34] "obs sum total (0.9999) for year (2014) doesn't sum to 1.0"
## [35] "obs sum total (1.0003) for year (2015) doesn't sum to 1.0"
## [36] "obs sum total (0.9998) for year (2016) doesn't sum to 1.0"
## [37] "obs sum total (0.9996) for year (2017) doesn't sum to 1.0"
## [38] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [40] "obs sum total (1.0002) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (1.0002) for year (2009) doesn't sum to 1.0"
## [42] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [43] "obs sum total (0.9999) for year (2011) doesn't sum to 1.0"
## [44] "obs sum total (0.9998) for year (2014) doesn't sum to 1.0"
## [45] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [46] "obs sum total (0.9999) for year (2002) doesn't sum to 1.0"
## [47] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [48] "obs sum total (1.0001) for year (2004) doesn't sum to 1.0"
## [49] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [50] "obs sum total (1.0004) for year (2008) doesn't sum to 1.0"
## [51] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [52] "obs sum total (1.0001) for year (2017) doesn't sum to 1.0"
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
## [1] "obs sum total (0.9999) for year (1990) doesn't sum to 1.0"
## [2] "obs sum total (0.9998) for year (1993) doesn't sum to 1.0"
## [3] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [4] "obs sum total (1.0002) for year (2001) doesn't sum to 1.0"
## [5] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [6] "obs sum total (0.9999) for year (2004) doesn't sum to 1.0"
## [7] "obs sum total (1.0001) for year (2005) doesn't sum to 1.0"
## [8] "obs sum total (0.9999) for year (2007) doesn't sum to 1.0"
## [9] "obs sum total (0.9998) for year (2008) doesn't sum to 1.0"
## [10] "obs sum total (1.0001) for year (2010) doesn't sum to 1.0"
## [11] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [12] "obs sum total (1.0001) for year (2013) doesn't sum to 1.0"
## [13] "obs sum total (1.0002) for year (2015) doesn't sum to 1.0"
## [14] "obs sum total (1.0003) for year (2017) doesn't sum to 1.0"
## [15] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [16] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [17] "obs sum total (0.9998) for year (1998) doesn't sum to 1.0"
## [18] "obs sum total (1.0002) for year (1992) doesn't sum to 1.0"
## [19] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [20] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [21] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [22] "obs sum total (1.0002) for year (1998) doesn't sum to 1.0"
## [23] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [24] "obs sum total (1.0002) for year (2002) doesn't sum to 1.0"
## [25] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [26] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [27] "obs sum total (1.0002) for year (2006) doesn't sum to 1.0"
## [28] "obs sum total (0.9998) for year (2007) doesn't sum to 1.0"
## [29] "obs sum total (0.9999) for year (2008) doesn't sum to 1.0"
## [30] "obs sum total (1.0001) for year (2009) doesn't sum to 1.0"
## [31] "obs sum total (1.0002) for year (2010) doesn't sum to 1.0"
## [32] "obs sum total (0.9997) for year (2011) doesn't sum to 1.0"
## [33] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [34] "obs sum total (0.9999) for year (2014) doesn't sum to 1.0"
## [35] "obs sum total (1.0003) for year (2015) doesn't sum to 1.0"
## [36] "obs sum total (0.9998) for year (2016) doesn't sum to 1.0"
## [37] "obs sum total (0.9996) for year (2017) doesn't sum to 1.0"
## [38] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [40] "obs sum total (1.0002) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (1.0002) for year (2009) doesn't sum to 1.0"
## [42] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [43] "obs sum total (0.9999) for year (2011) doesn't sum to 1.0"
## [44] "obs sum total (0.9998) for year (2014) doesn't sum to 1.0"
## [45] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [46] "obs sum total (0.9999) for year (2002) doesn't sum to 1.0"
## [47] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [48] "obs sum total (1.0001) for year (2004) doesn't sum to 1.0"
## [49] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [50] "obs sum total (1.0004) for year (2008) doesn't sum to 1.0"
## [51] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [52] "obs sum total (1.0001) for year (2017) doesn't sum to 1.0"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
## [1] "obs sum total (0.9999) for year (1990) doesn't sum to 1.0"
## [2] "obs sum total (0.9998) for year (1993) doesn't sum to 1.0"
## [3] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [4] "obs sum total (1.0002) for year (2001) doesn't sum to 1.0"
## [5] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [6] "obs sum total (0.9999) for year (2004) doesn't sum to 1.0"
## [7] "obs sum total (1.0001) for year (2005) doesn't sum to 1.0"
## [8] "obs sum total (0.9999) for year (2007) doesn't sum to 1.0"
## [9] "obs sum total (0.9998) for year (2008) doesn't sum to 1.0"
## [10] "obs sum total (1.0001) for year (2010) doesn't sum to 1.0"
## [11] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [12] "obs sum total (1.0001) for year (2013) doesn't sum to 1.0"
## [13] "obs sum total (1.0002) for year (2015) doesn't sum to 1.0"
## [14] "obs sum total (1.0003) for year (2017) doesn't sum to 1.0"
## [15] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [16] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [17] "obs sum total (0.9998) for year (1998) doesn't sum to 1.0"
## [18] "obs sum total (1.0002) for year (1992) doesn't sum to 1.0"
## [19] "obs sum total (1.0002) for year (1993) doesn't sum to 1.0"
## [20] "obs sum total (0.9999) for year (1994) doesn't sum to 1.0"
## [21] "obs sum total (0.9999) for year (1996) doesn't sum to 1.0"
## [22] "obs sum total (1.0002) for year (1998) doesn't sum to 1.0"
## [23] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [24] "obs sum total (1.0002) for year (2002) doesn't sum to 1.0"
## [25] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [26] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [27] "obs sum total (1.0002) for year (2006) doesn't sum to 1.0"
## [28] "obs sum total (0.9998) for year (2007) doesn't sum to 1.0"
## [29] "obs sum total (0.9999) for year (2008) doesn't sum to 1.0"
## [30] "obs sum total (1.0001) for year (2009) doesn't sum to 1.0"
## [31] "obs sum total (1.0002) for year (2010) doesn't sum to 1.0"
## [32] "obs sum total (0.9997) for year (2011) doesn't sum to 1.0"
## [33] "obs sum total (1.0001) for year (2012) doesn't sum to 1.0"
## [34] "obs sum total (0.9999) for year (2014) doesn't sum to 1.0"
## [35] "obs sum total (1.0003) for year (2015) doesn't sum to 1.0"
## [36] "obs sum total (0.9998) for year (2016) doesn't sum to 1.0"
## [37] "obs sum total (0.9996) for year (2017) doesn't sum to 1.0"
## [38] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [39] "obs sum total (1.0002) for year (2003) doesn't sum to 1.0"
## [40] "obs sum total (1.0002) for year (2005) doesn't sum to 1.0"
## [41] "obs sum total (1.0002) for year (2009) doesn't sum to 1.0"
## [42] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [43] "obs sum total (0.9999) for year (2011) doesn't sum to 1.0"
## [44] "obs sum total (0.9998) for year (2014) doesn't sum to 1.0"
## [45] "obs sum total (1.0001) for year (2001) doesn't sum to 1.0"
## [46] "obs sum total (0.9999) for year (2002) doesn't sum to 1.0"
## [47] "obs sum total (1.0001) for year (2003) doesn't sum to 1.0"
## [48] "obs sum total (1.0001) for year (2004) doesn't sum to 1.0"
## [49] "obs sum total (0.9999) for year (2005) doesn't sum to 1.0"
## [50] "obs sum total (1.0004) for year (2008) doesn't sum to 1.0"
## [51] "obs sum total (0.9998) for year (2010) doesn't sum to 1.0"
## [52] "obs sum total (1.0001) for year (2017) doesn't sum to 1.0"
## [53] "estimated parameter 'selectivity[trwlFSel_m].sigma_r' was within 0.001 of upper bound 200"
## [54] "estimated parameter 'selectivity[trwlFSel_m].sigma_r' was within 0.001 of upper bound 200"
Time series comparisons with CASAL base model results
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Actual catches for trawl match: yes"
## [1] "Actual catches for line_home match: yes"
## [1] "Actual catches for line_spawn match: yes"
## [1] ""
Derived quantities
SB0, SBcurrent, MSY, F_MSY, others...
Comparison plots
## [1] "CASAL base parameter correlation range (excluding 1.0): -0.7359 0.9329"
## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.9879 0.982"
## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): -0.762745 0.93218"
## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): -0.762745 0.93218"
## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.989428 0.979127"
## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.762745 0.93218"
## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.762745 0.93218"
## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.989428 0.979127"